Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Gm5939-201ENSMUST00000119613 2874 ntBASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.66□□□□□ -0.06
Smc1aQ9CU62 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Gm45784-201ENSMUST00000188360 142 ntBASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Smc1aQ9CU62 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 AC114543.1-201ENSMUST00000226451 1558 ntBASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Snora78-201ENSMUST00000158630 128 ntBASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Gm8775-201ENSMUST00000170943 1327 ntBASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Smc1aQ9CU62 Gm5422-201ENSMUST00000050717 2721 ntBASIC14.65□□□□□ -0.07
Smc1aQ9CU62 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
Smc1aQ9CU62 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms