Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Gm14350-201ENSMUST00000116642 640 ntBASIC12.37□□□□□ -0.43
Clrn1Q8K445 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Gm7063-201ENSMUST00000186840 981 ntBASIC12.37□□□□□ -0.43
Clrn1Q8K445 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Gm7653-201ENSMUST00000214567 508 ntBASIC12.37□□□□□ -0.43
Clrn1Q8K445 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Gm16372-201ENSMUST00000073088 450 ntBASIC12.37□□□□□ -0.43
Clrn1Q8K445 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clrn1Q8K445 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Gm16202-201ENSMUST00000117532 544 ntBASIC12.36□□□□□ -0.43
Clrn1Q8K445 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Gm37019-201ENSMUST00000192133 2134 ntBASIC12.36□□□□□ -0.43
Clrn1Q8K445 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Gm19931-201ENSMUST00000198920 368 ntBASIC12.36□□□□□ -0.43
Clrn1Q8K445 Gm7287-201ENSMUST00000205267 602 ntBASIC12.36□□□□□ -0.43
Clrn1Q8K445 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.36□□□□□ -0.43
Clrn1Q8K445 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clrn1Q8K445 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Gm13612-201ENSMUST00000119276 390 ntBASIC12.35□□□□□ -0.43
Clrn1Q8K445 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Gm9002-201ENSMUST00000178437 499 ntBASIC12.35□□□□□ -0.43
Clrn1Q8K445 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Clrn1Q8K445 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms