Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Gm6222-202ENSMUST00000182143 629 ntBASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Gm5896-201ENSMUST00000189662 1024 ntBASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim47Q8C0E3 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 CT009713.10-201ENSMUST00000225013 1986 ntBASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Gm26185-201ENSMUST00000157692 266 ntBASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Gm38297-201ENSMUST00000195122 1057 ntBASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Gm19309-201ENSMUST00000218295 205 ntBASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Gm19163-201ENSMUST00000223313 780 ntBASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Trim47Q8C0E3 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm17420-201ENSMUST00000164753 153 ntBASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm25927-201ENSMUST00000175058 117 ntBASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm42693-201ENSMUST00000196779 631 ntBASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm19931-201ENSMUST00000198920 368 ntBASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm17823-201ENSMUST00000217830 1006 ntBASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm10478-201ENSMUST00000084451 396 ntBASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
Trim47Q8C0E3 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim47Q8C0E3 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim47Q8C0E3 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC14.49□□□□□ -0.09
Trim47Q8C0E3 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.49□□□□□ -0.09
Trim47Q8C0E3 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim47Q8C0E3 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim47Q8C0E3 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC14.49□□□□□ -0.09
Trim47Q8C0E3 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.49□□□□□ -0.09
Trim47Q8C0E3 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC14.49□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms