Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm37737-201ENSMUST00000195013 1638 ntBASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Gm6992-201ENSMUST00000217973 1607 ntBASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Gm23270-201ENSMUST00000104055 131 ntBASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Gm18827-201ENSMUST00000188341 790 ntBASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Gm31256-201ENSMUST00000194705 506 ntBASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 CT573034.1-201ENSMUST00000222983 313 ntBASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC17.87■□□□□ 0.45
Usp40Q8BWR4 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm13492-201ENSMUST00000119772 665 ntBASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm37466-201ENSMUST00000195692 652 ntBASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Gm43399-201ENSMUST00000202546 2374 ntBASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usp40Q8BWR4 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Gm5597-201ENSMUST00000182353 1193 ntBASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Gm8862-201ENSMUST00000198379 1346 ntBASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Gm7993-201ENSMUST00000200970 1384 ntBASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Mir339-201ENSMUST00000083659 96 ntBASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Gm38391-201ENSMUST00000191720 4069 ntBASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Usp40Q8BWR4 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Gm19863-201ENSMUST00000192480 2218 ntBASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms