Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm11618-201ENSMUST00000117946 267 ntBASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm24196-201ENSMUST00000179161 110 ntBASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm27847-201ENSMUST00000183711 107 ntBASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm27375-201ENSMUST00000183799 107 ntBASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm13050-201ENSMUST00000122149 1345 ntBASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gm45638-201ENSMUST00000211507 2878 ntBASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Gm8131-201ENSMUST00000213783 1570 ntBASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3bQ3ULL6 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Gm8602-201ENSMUST00000184045 607 ntBASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC14.02□□□□□ -0.17
Upf3bQ3ULL6 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Gm11978-201ENSMUST00000122315 466 ntBASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3bQ3ULL6 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms