Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm10729-202ENSMUST00000193403 1375 ntBASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm14017-201ENSMUST00000121934 386 ntBASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Mir7221-201ENSMUST00000184009 72 ntBASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm38317-201ENSMUST00000195564 343 ntBASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Rps4l-202ENSMUST00000204242 789 ntBASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Gm38391-201ENSMUST00000191720 4069 ntBASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3aQ3ULJ3 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Gm5904-201ENSMUST00000210286 865 ntBASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Gm45779-201ENSMUST00000212189 4064 ntBASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3aQ3ULJ3 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3aQ3ULJ3 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 75.9 ms