Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Gm11637-201ENSMUST00000120601 592 ntBASIC14.47□□□□□ -0.09
Col6a1Q04857 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 AU022133-201ENSMUST00000200601 873 ntBASIC14.47□□□□□ -0.09
Col6a1Q04857 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 CT009718.3-201ENSMUST00000221116 367 ntBASIC14.47□□□□□ -0.09
Col6a1Q04857 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm8805-201ENSMUST00000117848 313 ntBASIC14.46□□□□□ -0.09
Col6a1Q04857 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm12217-201ENSMUST00000118858 696 ntBASIC14.46□□□□□ -0.09
Col6a1Q04857 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Col6a1Q04857 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gstp-ps-201ENSMUST00000195526 631 ntBASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm13097-201ENSMUST00000210722 397 ntBASIC14.46□□□□□ -0.09
Col6a1Q04857 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm8959-201ENSMUST00000213150 571 ntBASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm30285-201ENSMUST00000214614 422 ntBASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gm9826-201ENSMUST00000029124 1299 ntBASIC14.46□□□□□ -0.09
Col6a1Q04857 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Col6a1Q04857 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col6a1Q04857 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.46□□□□□ -0.1
Col6a1Q04857 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col6a1Q04857 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.45□□□□□ -0.1
Col6a1Q04857 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC14.45□□□□□ -0.1
Col6a1Q04857 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC14.45□□□□□ -0.1
Col6a1Q04857 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.45□□□□□ -0.1
Col6a1Q04857 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Gm44069-201ENSMUST00000204898 506 ntBASIC14.45□□□□□ -0.1
Col6a1Q04857 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC14.45□□□□□ -0.1
Col6a1Q04857 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Col6a1Q04857 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
Col6a1Q04857 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col6a1Q04857 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms