Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Gm16215-201ENSMUST00000161990 637 ntBASIC14.17□□□□□ -0.14
RaraP11416 Mir7023-201ENSMUST00000185093 64 ntBASIC14.17□□□□□ -0.14
RaraP11416 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.17□□□□□ -0.14
RaraP11416 AC124732.1-201ENSMUST00000221551 910 ntBASIC14.17□□□□□ -0.14
RaraP11416 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC14.17□□□□□ -0.14
RaraP11416 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
RaraP11416 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RaraP11416 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
RaraP11416 Gm42829-201ENSMUST00000198417 2585 ntBASIC14.17□□□□□ -0.14
RaraP11416 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.17□□□□□ -0.14
RaraP11416 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC14.17□□□□□ -0.14
RaraP11416 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RaraP11416 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC14.16□□□□□ -0.14
RaraP11416 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
RaraP11416 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RaraP11416 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Ldha-ps-201ENSMUST00000119390 995 ntBASIC14.16□□□□□ -0.14
RaraP11416 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC14.16□□□□□ -0.14
RaraP11416 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.16□□□□□ -0.14
RaraP11416 AC156560.2-201ENSMUST00000221232 264 ntBASIC14.16□□□□□ -0.14
RaraP11416 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC14.16□□□□□ -0.14
RaraP11416 AC132467.2-202ENSMUST00000227726 559 ntBASIC14.16□□□□□ -0.14
RaraP11416 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RaraP11416 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RaraP11416 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RaraP11416 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
RaraP11416 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RaraP11416 Gm43045-201ENSMUST00000198725 2095 ntBASIC14.15□□□□□ -0.14
RaraP11416 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC14.15□□□□□ -0.14
RaraP11416 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC14.15□□□□□ -0.14
RaraP11416 AC154276.1-201ENSMUST00000228874 1299 ntBASIC14.15□□□□□ -0.14
RaraP11416 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC14.15□□□□□ -0.14
RaraP11416 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.15□□□□□ -0.14
RaraP11416 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RaraP11416 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RaraP11416 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RaraP11416 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC14.15□□□□□ -0.14
RaraP11416 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC14.15□□□□□ -0.14
RaraP11416 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.15
RaraP11416 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
RaraP11416 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC14.14□□□□□ -0.15
RaraP11416 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
RaraP11416 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Gm3365-201ENSMUST00000216296 1480 ntBASIC14.14□□□□□ -0.15
RaraP11416 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Gm18630-201ENSMUST00000222109 1397 ntBASIC14.14□□□□□ -0.15
RaraP11416 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
RaraP11416 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
RaraP11416 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
RaraP11416 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms