Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Smarce1O54941 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC15.58■□□□□ 0.08
Smarce1O54941 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Smarce1O54941 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Smarce1O54941 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smarce1O54941 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Smarce1O54941 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC15.57■□□□□ 0.08
Smarce1O54941 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Smarce1O54941 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
Smarce1O54941 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC15.57■□□□□ 0.08
Smarce1O54941 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Mir6956-201ENSMUST00000183598 62 ntBASIC15.57■□□□□ 0.08
Smarce1O54941 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.57■□□□□ 0.08
Smarce1O54941 Gm38223-201ENSMUST00000194484 695 ntBASIC15.57■□□□□ 0.08
Smarce1O54941 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.57■□□□□ 0.08
Smarce1O54941 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
Smarce1O54941 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smarce1O54941 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC15.56■□□□□ 0.08
Smarce1O54941 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC15.56■□□□□ 0.08
Smarce1O54941 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Smarce1O54941 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Gm5354-201ENSMUST00000182417 973 ntBASIC15.56■□□□□ 0.08
Smarce1O54941 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC15.56■□□□□ 0.08
Smarce1O54941 AC192088.1-201ENSMUST00000227561 301 ntBASIC15.56■□□□□ 0.08
Smarce1O54941 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 AC153366.2-201ENSMUST00000219461 1984 ntBASIC15.56■□□□□ 0.08
Smarce1O54941 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Smarce1O54941 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
Smarce1O54941 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Smarce1O54941 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smarce1O54941 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Smarce1O54941 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Smarce1O54941 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
Smarce1O54941 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Smarce1O54941 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 AC241621.2-201ENSMUST00000223991 2151 ntBASIC15.55■□□□□ 0.08
Smarce1O54941 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Smarce1O54941 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.55■□□□□ 0.08
Smarce1O54941 Gm9755-201ENSMUST00000032981 1356 ntBASIC15.55■□□□□ 0.08
Smarce1O54941 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Gm6447-201ENSMUST00000118905 835 ntBASIC15.55■□□□□ 0.08
Smarce1O54941 Gm12416-201ENSMUST00000120911 1008 ntBASIC15.55■□□□□ 0.08
Smarce1O54941 Gm14719-201ENSMUST00000121891 340 ntBASIC15.55■□□□□ 0.08
Smarce1O54941 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Smarce1O54941 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms