Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Gm15240-201ENSMUST00000118156 720 ntBASIC12.96□□□□□ -0.33
Lima1Q9ERG0 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lima1Q9ERG0 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lima1Q9ERG0 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lima1Q9ERG0 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
Lima1Q9ERG0 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lima1Q9ERG0 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Lima1Q9ERG0 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lima1Q9ERG0 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Gm5466-201ENSMUST00000119395 1890 ntBASIC12.95□□□□□ -0.34
Lima1Q9ERG0 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lima1Q9ERG0 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Gm12151-201ENSMUST00000121374 290 ntBASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Gm15487-201ENSMUST00000122373 465 ntBASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms