Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Mir744-201ENSMUST00000103261 100 ntBASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm13351-201ENSMUST00000118087 414 ntBASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Rpsa-ps5-201ENSMUST00000121462 885 ntBASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm5863-201ENSMUST00000121760 1008 ntBASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 AC134537.1-201ENSMUST00000219205 265 ntBASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Scn4aQ9ER60 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Scn4aQ9ER60 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 AC171277.1-201ENSMUST00000216902 1441 ntBASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Scn4aQ9ER60 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm42872-201ENSMUST00000200026 1967 ntBASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm22920-201ENSMUST00000102175 109 ntBASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm14807-201ENSMUST00000116640 983 ntBASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm19587-201ENSMUST00000191395 545 ntBASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm3433-201ENSMUST00000210149 1058 ntBASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Gm7537-201ENSMUST00000221660 1414 ntBASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn4aQ9ER60 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm14213-201ENSMUST00000119778 768 ntBASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm14055-201ENSMUST00000130262 668 ntTSL 5 BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm24398-201ENSMUST00000157870 109 ntBASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm5700-201ENSMUST00000191483 989 ntBASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm9797-202ENSMUST00000218003 294 ntBASIC17.37■□□□□ 0.37
Scn4aQ9ER60 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Gm7722-201ENSMUST00000120646 741 ntBASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn4aQ9ER60 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms