Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Mir1982-201ENSMUST00000157368 74 ntBASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Gm29127-201ENSMUST00000188304 517 ntBASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Gm44064-201ENSMUST00000204964 1087 ntBASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Gm29705-201ENSMUST00000212598 474 ntBASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 AC134335.2-201ENSMUST00000227660 440 ntBASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Tmed9-203ENSMUST00000224741 1450 ntBASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Vps28Q9D1C8 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Vps28Q9D1C8 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Vps28Q9D1C8 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Vps28Q9D1C8 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
Vps28Q9D1C8 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Vps28Q9D1C8 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Vps28Q9D1C8 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Vps28Q9D1C8 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Gm27331-201ENSMUST00000183705 60 ntBASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Gm37922-201ENSMUST00000195596 455 ntBASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC13.45□□□□□ -0.26
Vps28Q9D1C8 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC13.45□□□□□ -0.26
Vps28Q9D1C8 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.45□□□□□ -0.26
Vps28Q9D1C8 AC122459.1-201ENSMUST00000228373 885 ntBASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.45□□□□□ -0.26
Vps28Q9D1C8 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Gm10327-201ENSMUST00000105222 1002 ntBASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Gm13226-201ENSMUST00000117838 404 ntBASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Mir7085-201ENSMUST00000184353 66 ntBASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Gm45784-201ENSMUST00000188360 142 ntBASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Gm44069-201ENSMUST00000204898 506 ntBASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Vps28Q9D1C8 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms