Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Use1Q9CQ56 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.43□□□□□ -0.42
Use1Q9CQ56 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 AC139382.1-201ENSMUST00000221402 498 ntBASIC12.42□□□□□ -0.42
Use1Q9CQ56 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Gm20445-201ENSMUST00000061905 565 ntBASIC12.42□□□□□ -0.42
Use1Q9CQ56 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Gm5466-201ENSMUST00000119395 1890 ntBASIC12.42□□□□□ -0.42
Use1Q9CQ56 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Use1Q9CQ56 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm27306-201ENSMUST00000183970 107 ntBASIC12.41□□□□□ -0.42
Use1Q9CQ56 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.41□□□□□ -0.42
Use1Q9CQ56 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Use1Q9CQ56 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms