Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm11591-201ENSMUST00000120063 702 ntBASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm12363-201ENSMUST00000122250 668 ntBASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm17208-201ENSMUST00000168388 535 ntBASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm5896-201ENSMUST00000189662 1024 ntBASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm43179-201ENSMUST00000198797 275 ntBASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm43118-201ENSMUST00000199149 775 ntBASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm9823-201ENSMUST00000051212 327 ntBASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Gm8793-201ENSMUST00000183069 1303 ntBASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubfd1Q78JW9 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ubfd1Q78JW9 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Ighv8-10-201ENSMUST00000199579 358 ntBASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC12.77□□□□□ -0.37
Ubfd1Q78JW9 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Gm11793-201ENSMUST00000120433 981 ntBASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Gm6222-202ENSMUST00000182143 629 ntBASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Mir6420-201ENSMUST00000185032 102 ntBASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ubfd1Q78JW9 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms