Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gm4271-201ENSMUST00000174444 973 ntBASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gm27682-201ENSMUST00000183930 110 ntBASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gm19184-201ENSMUST00000196798 928 ntBASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Hmgb4Q6P8W9 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Gm13886-201ENSMUST00000117876 1183 ntBASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb4Q6P8W9 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Gm37008-201ENSMUST00000195712 319 ntBASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb4Q6P8W9 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb4Q6P8W9 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb4Q6P8W9 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb4Q6P8W9 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb4Q6P8W9 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms