Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm13689-201ENSMUST00000119360 685 ntBASIC15.46■□□□□ 0.07
Limch1Q3UH68 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC15.46■□□□□ 0.07
Limch1Q3UH68 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Gm6091-201ENSMUST00000098307 165 ntBASIC15.46■□□□□ 0.07
Limch1Q3UH68 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
Limch1Q3UH68 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Limch1Q3UH68 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Limch1Q3UH68 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Limch1Q3UH68 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm5385-201ENSMUST00000118988 1559 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm9947-201ENSMUST00000067599 2920 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm44401-201ENSMUST00000204462 2375 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm6161-201ENSMUST00000121942 1102 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm8062-201ENSMUST00000139696 444 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm6254-201ENSMUST00000168178 1072 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm6153-201ENSMUST00000172004 1058 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm37424-201ENSMUST00000191727 561 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm5276-201ENSMUST00000196683 1047 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm5641-202ENSMUST00000198699 1080 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 CT573086.1-201ENSMUST00000227202 1074 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 AC140451.2-201ENSMUST00000228030 664 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Ssr1-203ENSMUST00000225246 1825 ntBASIC15.45■□□□□ 0.06
Limch1Q3UH68 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Limch1Q3UH68 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm45003-201ENSMUST00000205875 2158 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm11400-201ENSMUST00000120853 1214 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm16342-201ENSMUST00000124025 1025 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm27731-201ENSMUST00000185192 107 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm9728-201ENSMUST00000200197 1055 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm6983-201ENSMUST00000214912 628 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm10478-201ENSMUST00000084451 396 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms