Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Abl2-202ENSMUST00000166172 10151 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Sipa1l3-215ENSMUST00000183096 7713 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Sipa1l3-201ENSMUST00000085809 7713 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm10812-201ENSMUST00000099864 546 ntBASIC10.75□□□□□ -0.69
Trim63Q38HM4 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim63Q38HM4 Btrc-209ENSMUST00000224478 2194 ntBASIC10.75□□□□□ -0.69
Trim63Q38HM4 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Atg10-201ENSMUST00000022119 1583 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Gm11355-201ENSMUST00000121120 306 ntBASIC10.74□□□□□ -0.69
Trim63Q38HM4 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Gm44719-201ENSMUST00000206404 149 ntBASIC10.74□□□□□ -0.69
Trim63Q38HM4 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC10.74□□□□□ -0.69
Trim63Q38HM4 Gm18165-201ENSMUST00000217426 928 ntBASIC10.74□□□□□ -0.69
Trim63Q38HM4 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Tor1aip2-201ENSMUST00000060404 5135 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC10.74□□□□□ -0.69
Trim63Q38HM4 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Zfp704-201ENSMUST00000041124 13834 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Kmt2a-202ENSMUST00000114689 16470 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Trim63Q38HM4 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Hivep2-204ENSMUST00000187083 9268 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Gm43522-201ENSMUST00000196697 1922 ntBASIC10.74□□□□□ -0.69
Trim63Q38HM4 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim63Q38HM4 Gm8096-201ENSMUST00000209921 1591 ntBASIC10.73□□□□□ -0.69
Trim63Q38HM4 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Mllt3-201ENSMUST00000078090 6069 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Apc-203ENSMUST00000115781 12346 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Gm22240-201ENSMUST00000175225 82 ntBASIC10.73□□□□□ -0.69
Trim63Q38HM4 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
Trim63Q38HM4 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms