Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cux1P53564 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Cux1P53564 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cux1P53564 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Cux1P53564 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Cux1P53564 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cux1P53564 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cux1P53564 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cux1P53564 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cux1P53564 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cux1P53564 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cux1P53564 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cux1P53564 AC122314.1-201ENSMUST00000223056 2239 ntBASIC19.82■□□□□ 0.76
Cux1P53564 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC19.82■□□□□ 0.76
Cux1P53564 Gm6335-201ENSMUST00000118081 1194 ntBASIC19.82■□□□□ 0.76
Cux1P53564 Gm7816-201ENSMUST00000119884 1194 ntBASIC19.82■□□□□ 0.76
Cux1P53564 Gm15542-201ENSMUST00000121585 1194 ntBASIC19.82■□□□□ 0.76
Cux1P53564 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC19.82■□□□□ 0.76
Cux1P53564 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC19.82■□□□□ 0.76
Cux1P53564 Mir7032-201ENSMUST00000185154 79 ntBASIC19.82■□□□□ 0.76
Cux1P53564 Gm21027-201ENSMUST00000219300 1236 ntBASIC19.82■□□□□ 0.76
Cux1P53564 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC19.82■□□□□ 0.76
Cux1P53564 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Cux1P53564 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC19.82■□□□□ 0.76
Cux1P53564 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC19.82■□□□□ 0.76
Cux1P53564 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC19.82■□□□□ 0.76
Cux1P53564 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC19.82■□□□□ 0.76
Cux1P53564 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC19.82■□□□□ 0.76
Cux1P53564 CT025610.1-201ENSMUST00000224552 1786 ntBASIC19.82■□□□□ 0.76
Cux1P53564 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Cux1P53564 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC19.81■□□□□ 0.76
Cux1P53564 Gm5863-201ENSMUST00000121760 1008 ntBASIC19.81■□□□□ 0.76
Cux1P53564 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC19.81■□□□□ 0.76
Cux1P53564 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC19.81■□□□□ 0.76
Cux1P53564 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Gm18730-201ENSMUST00000218038 343 ntBASIC19.81■□□□□ 0.76
Cux1P53564 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC19.81■□□□□ 0.76
Cux1P53564 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Cux1P53564 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC19.81■□□□□ 0.76
Cux1P53564 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC19.81■□□□□ 0.76
Cux1P53564 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
Cux1P53564 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC19.81■□□□□ 0.76
Cux1P53564 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC19.81■□□□□ 0.76
Cux1P53564 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Gm15515-201ENSMUST00000117827 822 ntBASIC19.81■□□□□ 0.76
Cux1P53564 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC19.81■□□□□ 0.76
Cux1P53564 Gm44126-201ENSMUST00000204831 514 ntBASIC19.81■□□□□ 0.76
Cux1P53564 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cux1P53564 Gm10676-201ENSMUST00000098778 3221 ntBASIC19.81■□□□□ 0.76
Cux1P53564 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC19.8■□□□□ 0.76
Cux1P53564 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Cux1P53564 Gm14644-201ENSMUST00000116671 647 ntBASIC19.8■□□□□ 0.76
Cux1P53564 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC19.8■□□□□ 0.76
Cux1P53564 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC19.8■□□□□ 0.76
Cux1P53564 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC19.8■□□□□ 0.76
Cux1P53564 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC19.8■□□□□ 0.76
Cux1P53564 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cux1P53564 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Cux1P53564 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Cux1P53564 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC19.79■□□□□ 0.76
Cux1P53564 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms