Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC10.72□□□□□ -0.69
Sdc1P18828 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC10.72□□□□□ -0.69
Sdc1P18828 Gm19931-201ENSMUST00000198920 368 ntBASIC10.72□□□□□ -0.69
Sdc1P18828 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC10.72□□□□□ -0.69
Sdc1P18828 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC10.72□□□□□ -0.69
Sdc1P18828 AC090659.1-201ENSMUST00000224334 768 ntBASIC10.72□□□□□ -0.69
Sdc1P18828 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Sdc1P18828 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Gm11873-201ENSMUST00000117877 1304 ntBASIC10.72□□□□□ -0.69
Sdc1P18828 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Sdc1P18828 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC10.72□□□□□ -0.69
Sdc1P18828 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC10.72□□□□□ -0.69
Sdc1P18828 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
Sdc1P18828 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Sdc1P18828 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Sdc1P18828 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Gm6539-201ENSMUST00000119157 1064 ntBASIC10.71□□□□□ -0.69
Sdc1P18828 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Sdc1P18828 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
Sdc1P18828 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Gm6211-201ENSMUST00000147973 4275 ntBASIC10.71□□□□□ -0.69
Sdc1P18828 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC10.71□□□□□ -0.69
Sdc1P18828 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC10.71□□□□□ -0.69
Sdc1P18828 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC10.71□□□□□ -0.69
Sdc1P18828 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Gm43174-201ENSMUST00000195914 2445 ntBASIC10.71□□□□□ -0.69
Sdc1P18828 Gm45011-201ENSMUST00000207620 2297 ntBASIC10.71□□□□□ -0.69
Sdc1P18828 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC10.71□□□□□ -0.69
Sdc1P18828 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC10.71□□□□□ -0.69
Sdc1P18828 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Arhgef3-204ENSMUST00000225949 3198 ntBASIC10.71□□□□□ -0.69
Sdc1P18828 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC10.71□□□□□ -0.69
Sdc1P18828 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Sdc1P18828 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC10.71□□□□□ -0.7
Sdc1P18828 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Sdc1P18828 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Sdc1P18828 Gm42943-201ENSMUST00000199676 3242 ntBASIC10.71□□□□□ -0.7
Sdc1P18828 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC10.71□□□□□ -0.7
Sdc1P18828 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Sdc1P18828 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
Sdc1P18828 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC10.7□□□□□ -0.7
Sdc1P18828 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Sdc1P18828 Gm6210-201ENSMUST00000204734 1942 ntBASIC10.7□□□□□ -0.7
Sdc1P18828 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Sdc1P18828 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC10.7□□□□□ -0.7
Sdc1P18828 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Sdc1P18828 AC154262.2-202ENSMUST00000225158 1331 ntBASIC10.7□□□□□ -0.7
Sdc1P18828 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC10.7□□□□□ -0.7
Sdc1P18828 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms