Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.2□□□□□ -0.14
RaraP11416 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RaraP11416 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RaraP11416 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC14.19□□□□□ -0.14
RaraP11416 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Ldb3-207ENSMUST00000227819 1499 ntBASIC14.19□□□□□ -0.14
RaraP11416 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RaraP11416 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.19□□□□□ -0.14
RaraP11416 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Gm6218-201ENSMUST00000219812 628 ntBASIC14.19□□□□□ -0.14
RaraP11416 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC14.19□□□□□ -0.14
RaraP11416 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC14.19□□□□□ -0.14
RaraP11416 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC14.19□□□□□ -0.14
RaraP11416 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
RaraP11416 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Gm15222-202ENSMUST00000228667 1726 ntBASIC14.18□□□□□ -0.14
RaraP11416 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.18□□□□□ -0.14
RaraP11416 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC14.18□□□□□ -0.14
RaraP11416 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
RaraP11416 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Gm5303-201ENSMUST00000117943 1252 ntBASIC14.18□□□□□ -0.14
RaraP11416 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC14.18□□□□□ -0.14
RaraP11416 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC14.18□□□□□ -0.14
RaraP11416 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.18□□□□□ -0.14
RaraP11416 Gm38223-201ENSMUST00000194484 695 ntBASIC14.18□□□□□ -0.14
RaraP11416 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Gm20949-201ENSMUST00000206478 952 ntBASIC14.18□□□□□ -0.14
RaraP11416 AC093022.5-201ENSMUST00000226841 1079 ntBASIC14.18□□□□□ -0.14
RaraP11416 Wdyhv1-203ENSMUST00000226889 394 ntBASIC14.18□□□□□ -0.14
RaraP11416 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC14.18□□□□□ -0.14
RaraP11416 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.18□□□□□ -0.14
RaraP11416 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
RaraP11416 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RaraP11416 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RaraP11416 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
RaraP11416 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Gm44241-201ENSMUST00000203230 1662 ntBASIC14.17□□□□□ -0.14
RaraP11416 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RaraP11416 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
RaraP11416 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RaraP11416 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.17□□□□□ -0.14
RaraP11416 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RaraP11416 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC14.17□□□□□ -0.14
RaraP11416 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.17□□□□□ -0.14
RaraP11416 Gm16342-201ENSMUST00000124025 1025 ntBASIC14.17□□□□□ -0.14
RaraP11416 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms