Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm12485-201ENSMUST00000119641 291 ntBASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm45059-201ENSMUST00000205558 1077 ntBASIC12.4□□□□□ -0.42
Trim3Q9R1R2 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 AC155252.1-201ENSMUST00000226462 1208 ntBASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.4□□□□□ -0.42
Trim3Q9R1R2 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
Trim3Q9R1R2 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Trim3Q9R1R2 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Trim3Q9R1R2 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Trim3Q9R1R2 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.39□□□□□ -0.43
Trim3Q9R1R2 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm28911-201ENSMUST00000188837 117 ntBASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm5186-201ENSMUST00000218781 920 ntBASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Trim3Q9R1R2 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim3Q9R1R2 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim3Q9R1R2 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim3Q9R1R2 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim3Q9R1R2 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Trim3Q9R1R2 Gm43273-201ENSMUST00000199649 2594 ntBASIC12.38□□□□□ -0.43
Trim3Q9R1R2 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 78.1 ms