Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC15.33■□□□□ 0.04
Scn11aQ9R053 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
Scn11aQ9R053 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Gm45925-201ENSMUST00000218882 744 ntBASIC15.33■□□□□ 0.04
Scn11aQ9R053 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Gm14832-201ENSMUST00000121289 322 ntBASIC15.32■□□□□ 0.04
Scn11aQ9R053 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Gm9678-201ENSMUST00000198979 1149 ntBASIC15.32■□□□□ 0.04
Scn11aQ9R053 AC093022.5-201ENSMUST00000226841 1079 ntBASIC15.32■□□□□ 0.04
Scn11aQ9R053 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Gm10782-202ENSMUST00000223775 1480 ntBASIC15.32■□□□□ 0.04
Scn11aQ9R053 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn11aQ9R053 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Gm9550-201ENSMUST00000161130 862 ntBASIC15.31■□□□□ 0.04
Scn11aQ9R053 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Gm8617-201ENSMUST00000118796 2222 ntBASIC15.31■□□□□ 0.04
Scn11aQ9R053 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC15.31■□□□□ 0.04
Scn11aQ9R053 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Gm23119-201ENSMUST00000158610 140 ntBASIC15.31■□□□□ 0.04
Scn11aQ9R053 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Gm8385-201ENSMUST00000058999 643 ntBASIC15.31■□□□□ 0.04
Scn11aQ9R053 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC15.31■□□□□ 0.04
Scn11aQ9R053 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn11aQ9R053 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms