Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Gm6903-201ENSMUST00000160509 1366 ntBASIC17.43■□□□□ 0.38
Scn4aQ9ER60 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Gm43697-201ENSMUST00000199637 2581 ntBASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm16380-201ENSMUST00000077997 478 ntBASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm44056-201ENSMUST00000204623 1427 ntBASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm45575-201ENSMUST00000210283 548 ntBASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Olfr692-202ENSMUST00000217827 1126 ntBASIC17.42■□□□□ 0.38
Scn4aQ9ER60 AC129308.3-201ENSMUST00000225652 524 ntBASIC17.42■□□□□ 0.38
Scn4aQ9ER60 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Olfr692-201ENSMUST00000098152 1126 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm13142-201ENSMUST00000117213 1453 ntBASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn4aQ9ER60 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Mmp14-206ENSMUST00000225641 3238 ntBASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Gm6831-202ENSMUST00000213025 1673 ntBASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Gm43509-201ENSMUST00000196551 2594 ntBASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Gm11619-201ENSMUST00000117474 237 ntBASIC17.41■□□□□ 0.38
Scn4aQ9ER60 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 AC154257.1-202ENSMUST00000224729 843 ntBASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn4aQ9ER60 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm18367-201ENSMUST00000176139 600 ntBASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm37852-201ENSMUST00000193027 350 ntBASIC17.4■□□□□ 0.38
Scn4aQ9ER60 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 AC102368.1-201ENSMUST00000227161 892 ntBASIC17.4■□□□□ 0.38
Scn4aQ9ER60 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn4aQ9ER60 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms