Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm12957-201ENSMUST00000117835 377 ntBASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Mir6420-201ENSMUST00000185032 102 ntBASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.72□□□□□ -0.05
Smc1aQ9CU62 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm45706-201ENSMUST00000213063 2136 ntBASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Gm9200-201ENSMUST00000118513 1354 ntBASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Smc1aQ9CU62 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 AC126549.2-201ENSMUST00000223997 1976 ntBASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Gm15429-201ENSMUST00000151268 798 ntBASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Gm2495-201ENSMUST00000191160 466 ntBASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Gm19078-201ENSMUST00000206311 727 ntBASIC14.71□□□□□ -0.05
Smc1aQ9CU62 AC139350.3-201ENSMUST00000226151 420 ntBASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Smc1aQ9CU62 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Smc1aQ9CU62 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Smc1aQ9CU62 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Smc1aQ9CU62 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Gm11524-201ENSMUST00000119349 807 ntBASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Gm9347-201ENSMUST00000211473 1607 ntBASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms