Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gm13829-201ENSMUST00000119600 138 ntBASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gm18062-201ENSMUST00000208020 547 ntBASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gm18055-201ENSMUST00000208254 547 ntBASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gm17795-201ENSMUST00000214505 757 ntBASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gm15459-201ENSMUST00000117405 1941 ntBASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Gm8355-201ENSMUST00000177767 1941 ntBASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sh3rf1Q69ZI1 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Gm43273-201ENSMUST00000199649 2594 ntBASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Gm6266-201ENSMUST00000203844 806 ntBASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 AC162801.1-201ENSMUST00000220612 198 ntBASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 CT030657.3-201ENSMUST00000222707 1200 ntBASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 AC125350.2-201ENSMUST00000224737 727 ntBASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sh3rf1Q69ZI1 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
Sh3rf1Q69ZI1 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC13.33□□□□□ -0.27
Sh3rf1Q69ZI1 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Sh3rf1Q69ZI1 AC151895.1-201ENSMUST00000219025 1742 ntBASIC13.33□□□□□ -0.27
Sh3rf1Q69ZI1 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Sh3rf1Q69ZI1 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Sh3rf1Q69ZI1 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Gm15678-201ENSMUST00000117573 960 ntBASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC13.33□□□□□ -0.28
Sh3rf1Q69ZI1 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms