Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm7561-201ENSMUST00000211203 886 ntBASIC15.49■□□□□ 0.07
Limch1Q3UH68 AC073947.2-201ENSMUST00000215888 1130 ntBASIC15.49■□□□□ 0.07
Limch1Q3UH68 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Pcgf5-211ENSMUST00000225920 6443 ntBASIC15.48■□□□□ 0.07
Limch1Q3UH68 AC137842.1-201ENSMUST00000227896 2064 ntBASIC15.48■□□□□ 0.07
Limch1Q3UH68 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Trav4d-2-201ENSMUST00000120914 335 ntBASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gm27847-201ENSMUST00000183711 107 ntBASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gm27375-201ENSMUST00000183799 107 ntBASIC15.48■□□□□ 0.07
Limch1Q3UH68 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gm42550-201ENSMUST00000201553 960 ntBASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gm45331-201ENSMUST00000209868 554 ntBASIC15.48■□□□□ 0.07
Limch1Q3UH68 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gm7002-201ENSMUST00000221386 2165 ntBASIC15.48■□□□□ 0.07
Limch1Q3UH68 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Limch1Q3UH68 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Limch1Q3UH68 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Gm13392-201ENSMUST00000117708 150 ntBASIC15.47■□□□□ 0.07
Limch1Q3UH68 Gm14660-201ENSMUST00000119809 575 ntBASIC15.47■□□□□ 0.07
Limch1Q3UH68 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Limch1Q3UH68 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Limch1Q3UH68 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC15.46■□□□□ 0.07
Limch1Q3UH68 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Limch1Q3UH68 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 76.5 ms