Protein–RNA interactions for Protein: Q07643

Col9a2, Collagen alpha-2(IX) chain, mousemouse

Predictions only

Length 688 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a2Q07643 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col9a2Q07643 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col9a2Q07643 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.22□□□□□ -0.13
Col9a2Q07643 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Gm2991-201ENSMUST00000173338 480 ntBASIC14.22□□□□□ -0.13
Col9a2Q07643 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.22□□□□□ -0.13
Col9a2Q07643 AC069562.3-201ENSMUST00000225387 587 ntBASIC14.22□□□□□ -0.13
Col9a2Q07643 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col9a2Q07643 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col9a2Q07643 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC14.21□□□□□ -0.13
Col9a2Q07643 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.21□□□□□ -0.13
Col9a2Q07643 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Col9a2Q07643 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.21□□□□□ -0.13
Col9a2Q07643 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Col9a2Q07643 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC14.21□□□□□ -0.13
Col9a2Q07643 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC14.21□□□□□ -0.13
Col9a2Q07643 Gm38341-201ENSMUST00000195357 515 ntBASIC14.21□□□□□ -0.13
Col9a2Q07643 AC135669.1-202ENSMUST00000216742 540 ntBASIC14.21□□□□□ -0.13
Col9a2Q07643 Gm9368-201ENSMUST00000219348 831 ntBASIC14.21□□□□□ -0.13
Col9a2Q07643 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Col9a2Q07643 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC14.21□□□□□ -0.13
Col9a2Q07643 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.21□□□□□ -0.13
Col9a2Q07643 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col9a2Q07643 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.21□□□□□ -0.14
Col9a2Q07643 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col9a2Q07643 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col9a2Q07643 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col9a2Q07643 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col9a2Q07643 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Col9a2Q07643 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.14
Col9a2Q07643 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.14
Col9a2Q07643 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col9a2Q07643 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Col9a2Q07643 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Col9a2Q07643 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col9a2Q07643 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.2□□□□□ -0.14
Col9a2Q07643 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col9a2Q07643 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col9a2Q07643 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.2□□□□□ -0.14
Col9a2Q07643 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col9a2Q07643 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col9a2Q07643 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col9a2Q07643 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col9a2Q07643 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Col9a2Q07643 Gm22323-201ENSMUST00000103832 109 ntBASIC14.2□□□□□ -0.14
Col9a2Q07643 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC14.2□□□□□ -0.14
Col9a2Q07643 Gm12502-201ENSMUST00000120197 444 ntBASIC14.2□□□□□ -0.14
Col9a2Q07643 Gm13297-201ENSMUST00000120205 934 ntBASIC14.2□□□□□ -0.14
Col9a2Q07643 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC14.2□□□□□ -0.14
Col9a2Q07643 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC14.2□□□□□ -0.14
Col9a2Q07643 Gm8801-201ENSMUST00000173255 1064 ntBASIC14.2□□□□□ -0.14
Col9a2Q07643 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms