Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Col8a1Q00780 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col8a1Q00780 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Mir1943-201ENSMUST00000158276 73 ntBASIC11.23□□□□□ -0.61
Col8a1Q00780 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Gm8176-201ENSMUST00000191297 1099 ntBASIC11.23□□□□□ -0.61
Col8a1Q00780 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC11.23□□□□□ -0.61
Col8a1Q00780 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Ssr1-204ENSMUST00000225319 1610 ntBASIC11.23□□□□□ -0.61
Col8a1Q00780 Gm44645-201ENSMUST00000205492 1653 ntBASIC11.23□□□□□ -0.61
Col8a1Q00780 Gm6159-201ENSMUST00000191249 1724 ntBASIC11.23□□□□□ -0.61
Col8a1Q00780 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col8a1Q00780 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col8a1Q00780 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm15770-201ENSMUST00000117498 584 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm7857-201ENSMUST00000117957 358 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm14208-201ENSMUST00000119645 678 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm14726-201ENSMUST00000120623 896 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm2231-201ENSMUST00000125661 612 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC11.22□□□□□ -0.61
Col8a1Q00780 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm45118-201ENSMUST00000208928 825 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm18244-201ENSMUST00000219747 1566 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm18615-201ENSMUST00000222919 1031 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Abhd6-203ENSMUST00000225234 1958 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Rubie-203ENSMUST00000227803 2430 ntBASIC11.22□□□□□ -0.61
Col8a1Q00780 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms