Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.63□□□□□ -0.39
Sox3P53784 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Sox3P53784 Cts7-204ENSMUST00000225321 1257 ntBASIC12.63□□□□□ -0.39
Sox3P53784 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sox3P53784 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sox3P53784 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sox3P53784 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Sox3P53784 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Gm10339-203ENSMUST00000225409 1671 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Sox3P53784 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.62□□□□□ -0.39
Sox3P53784 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.62□□□□□ -0.39
Sox3P53784 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC12.62□□□□□ -0.39
Sox3P53784 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Gm37008-201ENSMUST00000195712 319 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Gm44397-201ENSMUST00000195950 113 ntBASIC12.62□□□□□ -0.39
Sox3P53784 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Nsd1-205ENSMUST00000224693 852 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Sox3P53784 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Sox3P53784 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox3P53784 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.62□□□□□ -0.39
Sox3P53784 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Sox3P53784 AC126549.2-201ENSMUST00000223997 1976 ntBASIC12.61□□□□□ -0.39
Sox3P53784 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Sox3P53784 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Sox3P53784 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.61□□□□□ -0.39
Sox3P53784 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Gm22323-201ENSMUST00000103832 109 ntBASIC12.61□□□□□ -0.39
Sox3P53784 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC12.61□□□□□ -0.39
Sox3P53784 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC12.61□□□□□ -0.39
Sox3P53784 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC12.61□□□□□ -0.39
Sox3P53784 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Sox3P53784 Gm27331-201ENSMUST00000183705 60 ntBASIC12.61□□□□□ -0.39
Sox3P53784 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC12.61□□□□□ -0.39
Sox3P53784 Gm45865-201ENSMUST00000211815 945 ntBASIC12.61□□□□□ -0.39
Sox3P53784 Gm18935-201ENSMUST00000212692 664 ntBASIC12.61□□□□□ -0.39
Sox3P53784 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Sox3P53784 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Sox3P53784 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC12.61□□□□□ -0.39
Sox3P53784 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
Sox3P53784 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Sox3P53784 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.61□□□□□ -0.39
Sox3P53784 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.61□□□□□ -0.39
Sox3P53784 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.61□□□□□ -0.39
Sox3P53784 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sox3P53784 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms