Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC15.71■□□□□ 0.11
Rfx1P48377 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rfx1P48377 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rfx1P48377 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rfx1P48377 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Rfx1P48377 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rfx1P48377 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rfx1P48377 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Rfx1P48377 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rfx1P48377 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Rfx1P48377 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.1
Rfx1P48377 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Rfx1P48377 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC15.71■□□□□ 0.1
Rfx1P48377 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Rfx1P48377 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Rfx1P48377 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Rfx1P48377 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 AC154767.3-201ENSMUST00000225150 1342 ntBASIC15.7■□□□□ 0.1
Rfx1P48377 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Rfx1P48377 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Rfx1P48377 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC15.7■□□□□ 0.1
Rfx1P48377 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Rfx1P48377 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC15.7■□□□□ 0.1
Rfx1P48377 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC15.7■□□□□ 0.1
Rfx1P48377 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Gm27618-201ENSMUST00000183671 60 ntBASIC15.7■□□□□ 0.1
Rfx1P48377 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.7■□□□□ 0.1
Rfx1P48377 Gm44344-201ENSMUST00000200287 129 ntBASIC15.7■□□□□ 0.1
Rfx1P48377 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC15.7■□□□□ 0.1
Rfx1P48377 Gm18905-201ENSMUST00000205454 928 ntBASIC15.7■□□□□ 0.1
Rfx1P48377 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC15.7■□□□□ 0.1
Rfx1P48377 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC15.7■□□□□ 0.1
Rfx1P48377 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Rfx1P48377 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Pck2-205ENSMUST00000226352 2784 ntBASIC15.7■□□□□ 0.1
Rfx1P48377 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC15.7■□□□□ 0.1
Rfx1P48377 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
Rfx1P48377 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Rfx1P48377 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Gm37472-201ENSMUST00000192342 4052 ntBASIC15.7■□□□□ 0.1
Rfx1P48377 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Rfx1P48377 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Rfx1P48377 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Gm13886-201ENSMUST00000117876 1183 ntBASIC15.69■□□□□ 0.1
Rfx1P48377 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Gm25144-201ENSMUST00000179561 110 ntBASIC15.69■□□□□ 0.1
Rfx1P48377 Gm25352-201ENSMUST00000179815 110 ntBASIC15.69■□□□□ 0.1
Rfx1P48377 Gm3436-201ENSMUST00000179930 840 ntBASIC15.69■□□□□ 0.1
Rfx1P48377 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC15.69■□□□□ 0.1
Rfx1P48377 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC15.69■□□□□ 0.1
Rfx1P48377 Gm5425-201ENSMUST00000214125 459 ntBASIC15.69■□□□□ 0.1
Rfx1P48377 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC15.69■□□□□ 0.1
Rfx1P48377 Gm17330-201ENSMUST00000221047 165 ntBASIC15.69■□□□□ 0.1
Rfx1P48377 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Gm8798-201ENSMUST00000211877 1661 ntBASIC15.69■□□□□ 0.1
Rfx1P48377 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC15.69■□□□□ 0.1
Rfx1P48377 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Rfx1P48377 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms