Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm6184-201ENSMUST00000120403 1261 ntBASIC10.74□□□□□ -0.69
Sdc1P18828 Gm1401-201ENSMUST00000122048 772 ntBASIC10.74□□□□□ -0.69
Sdc1P18828 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC10.74□□□□□ -0.69
Sdc1P18828 Gm5177-201ENSMUST00000183092 997 ntBASIC10.74□□□□□ -0.69
Sdc1P18828 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC10.74□□□□□ -0.69
Sdc1P18828 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC10.74□□□□□ -0.69
Sdc1P18828 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 AV026068-213ENSMUST00000223675 1171 ntBASIC10.74□□□□□ -0.69
Sdc1P18828 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Sdc1P18828 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Sdc1P18828 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Sdc1P18828 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Sdc1P18828 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC10.74□□□□□ -0.69
Sdc1P18828 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm44942-201ENSMUST00000096093 2072 ntBASIC10.73□□□□□ -0.69
Sdc1P18828 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm43727-201ENSMUST00000198021 2647 ntBASIC10.73□□□□□ -0.69
Sdc1P18828 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC10.73□□□□□ -0.69
Sdc1P18828 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm7284-201ENSMUST00000131667 944 ntBASIC10.73□□□□□ -0.69
Sdc1P18828 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC10.73□□□□□ -0.69
Sdc1P18828 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC10.73□□□□□ -0.69
Sdc1P18828 CT025555.1-201ENSMUST00000225901 1217 ntBASIC10.73□□□□□ -0.69
Sdc1P18828 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC10.73□□□□□ -0.69
Sdc1P18828 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
Sdc1P18828 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC10.73□□□□□ -0.69
Sdc1P18828 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Sdc1P18828 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC10.73□□□□□ -0.69
Sdc1P18828 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Sdc1P18828 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Sdc1P18828 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC10.72□□□□□ -0.69
Sdc1P18828 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Sdc1P18828 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Sdc1P18828 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Sdc1P18828 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Sdc1P18828 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC10.72□□□□□ -0.69
Sdc1P18828 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
Sdc1P18828 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC10.72□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms