Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC14.23□□□□□ -0.13
RaraP11416 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
RaraP11416 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC14.23□□□□□ -0.13
RaraP11416 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
RaraP11416 AC155258.1-201ENSMUST00000219303 253 ntBASIC14.23□□□□□ -0.13
RaraP11416 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Rn7sk-201ENSMUST00000083103 331 ntBASIC14.23□□□□□ -0.13
RaraP11416 Gm26315-201ENSMUST00000083890 321 ntBASIC14.23□□□□□ -0.13
RaraP11416 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC14.23□□□□□ -0.13
RaraP11416 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
RaraP11416 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.23□□□□□ -0.13
RaraP11416 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
RaraP11416 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC14.23□□□□□ -0.13
RaraP11416 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.23□□□□□ -0.13
RaraP11416 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.23□□□□□ -0.13
RaraP11416 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC14.23□□□□□ -0.13
RaraP11416 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
RaraP11416 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
RaraP11416 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Gm3052-202ENSMUST00000188254 2224 ntBASIC14.22□□□□□ -0.13
RaraP11416 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC14.22□□□□□ -0.13
RaraP11416 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RaraP11416 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.22□□□□□ -0.13
RaraP11416 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC14.21□□□□□ -0.13
RaraP11416 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC14.21□□□□□ -0.13
RaraP11416 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC14.21□□□□□ -0.13
RaraP11416 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC14.21□□□□□ -0.13
RaraP11416 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC14.21□□□□□ -0.13
RaraP11416 Gm5354-201ENSMUST00000182417 973 ntBASIC14.21□□□□□ -0.13
RaraP11416 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
RaraP11416 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RaraP11416 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
RaraP11416 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC14.21□□□□□ -0.13
RaraP11416 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
RaraP11416 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RaraP11416 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
RaraP11416 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Zkscan3-207ENSMUST00000223831 2101 ntBASIC14.2□□□□□ -0.14
RaraP11416 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.2□□□□□ -0.14
RaraP11416 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RaraP11416 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Gm15920-201ENSMUST00000118998 402 ntBASIC14.2□□□□□ -0.14
RaraP11416 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.2□□□□□ -0.14
RaraP11416 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC14.2□□□□□ -0.14
RaraP11416 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RaraP11416 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC14.2□□□□□ -0.14
RaraP11416 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.2□□□□□ -0.14
RaraP11416 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RaraP11416 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
RaraP11416 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 101.9 ms