Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Gm38049-201ENSMUST00000195698 1372 ntBASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Gm12384-201ENSMUST00000119228 919 ntBASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Gm7029-201ENSMUST00000173226 450 ntBASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.15
Cpsf3Q9QXK7 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Gm14608-201ENSMUST00000120030 1553 ntBASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 AY702102-202ENSMUST00000194651 1173 ntBASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Gm10339-203ENSMUST00000225409 1671 ntBASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cpsf3Q9QXK7 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm1335-201ENSMUST00000121653 386 ntBASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm16479-201ENSMUST00000121706 932 ntBASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm2231-201ENSMUST00000125661 612 ntBASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm26927-201ENSMUST00000182385 965 ntBASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms