Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Gm13385-201ENSMUST00000121089 220 ntBASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Gm7390-201ENSMUST00000212452 1216 ntBASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Gm5425-201ENSMUST00000214125 459 ntBASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lima1Q9ERG0 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13□□□□□ -0.33
Lima1Q9ERG0 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC13□□□□□ -0.33
Lima1Q9ERG0 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC13□□□□□ -0.33
Lima1Q9ERG0 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Mir874-201ENSMUST00000104769 76 ntBASIC13□□□□□ -0.33
Lima1Q9ERG0 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Gm6912-201ENSMUST00000117218 544 ntBASIC13□□□□□ -0.33
Lima1Q9ERG0 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Lima1Q9ERG0 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lima1Q9ERG0 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 AC164702.1-201ENSMUST00000220135 2212 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 77 ms