Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Gm17070-201ENSMUST00000170463 784 ntBASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 CT571245.2-201ENSMUST00000218421 305 ntBASIC17.46■□□□□ 0.39
Scn4aQ9ER60 CT009536.2-201ENSMUST00000225370 665 ntBASIC17.46■□□□□ 0.39
Scn4aQ9ER60 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Scn4aQ9ER60 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Gm13328-201ENSMUST00000120816 1020 ntBASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Mir6941-201ENSMUST00000184711 59 ntBASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 1810026B05Rik-208ENSMUST00000190028 590 ntTSL 3 BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Scn4aQ9ER60 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 AC238811.4-201ENSMUST00000178019 1246 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 AC238940.3-201ENSMUST00000178830 1246 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm4654-201ENSMUST00000183305 982 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm38228-201ENSMUST00000193169 1293 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 AC140409.3-201ENSMUST00000215601 358 ntTSL 3 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm5805-201ENSMUST00000072779 456 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm22594-201ENSMUST00000104251 130 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm11578-201ENSMUST00000118530 459 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm44421-201ENSMUST00000205064 1221 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm6855-201ENSMUST00000206307 790 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Scn4aQ9ER60 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Gm24791-201ENSMUST00000104284 131 ntBASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Gm22711-201ENSMUST00000116890 133 ntBASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Scn4aQ9ER60 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms