Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC14.78□□□□□ -0.04
Ushbp1Q8R370 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Gm27572-201ENSMUST00000183702 255 ntBASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Gm29649-201ENSMUST00000185649 419 ntBASIC14.78□□□□□ -0.04
Ushbp1Q8R370 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Gm43179-201ENSMUST00000198797 275 ntBASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Gm42550-201ENSMUST00000201553 960 ntBASIC14.78□□□□□ -0.04
Ushbp1Q8R370 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Gm45706-201ENSMUST00000213063 2136 ntBASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
Ushbp1Q8R370 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Gm5466-201ENSMUST00000119395 1890 ntBASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ushbp1Q8R370 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Gm29127-201ENSMUST00000188304 517 ntBASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Gm5276-201ENSMUST00000196683 1047 ntBASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms