Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf4Q8BQZ5 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Cpsf4Q8BQZ5 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf4Q8BQZ5 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Gm11918-201ENSMUST00000121660 179 ntBASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf4Q8BQZ5 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm43423-201ENSMUST00000198390 2094 ntBASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm13689-201ENSMUST00000119360 685 ntBASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm45003-201ENSMUST00000205875 2158 ntBASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm44891-201ENSMUST00000208817 2223 ntBASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf4Q8BQZ5 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
Cpsf4Q8BQZ5 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Cpsf4Q8BQZ5 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms