Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Gm22018-201ENSMUST00000104357 131 ntBASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Gm42627-201ENSMUST00000197347 224 ntBASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 CU024892.2-201ENSMUST00000224608 832 ntBASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Ntrk2-208ENSMUST00000225583 2719 ntBASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Gm43579-201ENSMUST00000202387 1307 ntBASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Ubfd1Q78JW9 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 AC166491.1-201ENSMUST00000227053 2308 ntBASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 AC154725.1-201ENSMUST00000224826 1961 ntBASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Gm12329-201ENSMUST00000120829 1007 ntBASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Gm25261-201ENSMUST00000157416 134 ntBASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ubfd1Q78JW9 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Gm37042-201ENSMUST00000193816 581 ntBASIC12.81□□□□□ -0.36
Ubfd1Q78JW9 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 116.7 ms