Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm24830-201ENSMUST00000102024 166 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm12715-201ENSMUST00000121430 1128 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm25890-201ENSMUST00000177643 165 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Rnu1b2-201ENSMUST00000178073 165 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Rnu1b1-201ENSMUST00000178250 165 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm22614-201ENSMUST00000178300 165 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm26956-201ENSMUST00000182176 986 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm31256-201ENSMUST00000194705 506 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm43068-201ENSMUST00000201095 1273 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm5363-201ENSMUST00000211927 938 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm22042-201ENSMUST00000082989 165 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm26232-201ENSMUST00000083360 166 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm24136-201ENSMUST00000083374 165 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Rnu1b6-201ENSMUST00000083839 166 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm26110-201ENSMUST00000083971 165 ntBASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Upf3aQ3ULJ3 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gm2606-201ENSMUST00000100754 1002 ntBASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gm19963-201ENSMUST00000208413 1255 ntBASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gm7293-201ENSMUST00000216682 1007 ntBASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3aQ3ULJ3 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3aQ3ULJ3 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3aQ3ULJ3 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3aQ3ULJ3 Gm8228-201ENSMUST00000189949 2192 ntBASIC13.79□□□□□ -0.2
Upf3aQ3ULJ3 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3aQ3ULJ3 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 82.5 ms