Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Matn2-203ENSMUST00000226766 3252 ntBASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Gm44872-201ENSMUST00000207864 420 ntBASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ptchd3Q0EEE2 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Gm4875-201ENSMUST00000118257 786 ntBASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ptchd3Q0EEE2 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms