Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Cux1P53564 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Cux1P53564 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
Cux1P53564 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC19.91■□□□□ 0.78
Cux1P53564 Gm42937-201ENSMUST00000197360 752 ntBASIC19.91■□□□□ 0.78
Cux1P53564 Gm45770-201ENSMUST00000212105 616 ntBASIC19.91■□□□□ 0.78
Cux1P53564 Gm5369-201ENSMUST00000217499 588 ntBASIC19.91■□□□□ 0.78
Cux1P53564 AC163667.3-201ENSMUST00000225774 222 ntBASIC19.91■□□□□ 0.78
Cux1P53564 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cux1P53564 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC19.9■□□□□ 0.78
Cux1P53564 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Il17rd-203ENSMUST00000225146 3366 ntBASIC19.9■□□□□ 0.78
Cux1P53564 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Cux1P53564 Gm12286-201ENSMUST00000119246 1002 ntBASIC19.9■□□□□ 0.78
Cux1P53564 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC19.9■□□□□ 0.78
Cux1P53564 Gm43378-201ENSMUST00000199336 582 ntBASIC19.9■□□□□ 0.78
Cux1P53564 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
Cux1P53564 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC19.9■□□□□ 0.78
Cux1P53564 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Cux1P53564 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cux1P53564 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Cux1P53564 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.78
Cux1P53564 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Cux1P53564 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Cux1P53564 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Cux1P53564 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Cux1P53564 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC19.89■□□□□ 0.77
Cux1P53564 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC19.89■□□□□ 0.77
Cux1P53564 Gm5070-201ENSMUST00000177599 862 ntBASIC19.89■□□□□ 0.77
Cux1P53564 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.89■□□□□ 0.77
Cux1P53564 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Cux1P53564 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cux1P53564 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Gm28882-201ENSMUST00000185504 314 ntBASIC19.88■□□□□ 0.77
Cux1P53564 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Cux1P53564 Gm44136-201ENSMUST00000203819 1106 ntBASIC19.88■□□□□ 0.77
Cux1P53564 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC19.88■□□□□ 0.77
Cux1P53564 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Cux1P53564 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
Cux1P53564 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cux1P53564 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Cux1P53564 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC19.88■□□□□ 0.77
Cux1P53564 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cux1P53564 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cux1P53564 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Cux1P53564 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC19.87■□□□□ 0.77
Cux1P53564 Gm15703-201ENSMUST00000120250 880 ntBASIC19.87■□□□□ 0.77
Cux1P53564 Gm17040-202ENSMUST00000170597 889 ntBASIC19.87■□□□□ 0.77
Cux1P53564 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC19.87■□□□□ 0.77
Cux1P53564 AC159205.5-202ENSMUST00000224849 386 ntBASIC19.87■□□□□ 0.77
Cux1P53564 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Cux1P53564 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC19.87■□□□□ 0.77
Cux1P53564 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Cux1P53564 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms