Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC11.92□□□□□ -0.5
Rfx3P48381 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC11.92□□□□□ -0.5
Rfx3P48381 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC11.92□□□□□ -0.5
Rfx3P48381 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Gm15487-201ENSMUST00000122373 465 ntBASIC11.92□□□□□ -0.5
Rfx3P48381 Gm14730-201ENSMUST00000122378 1045 ntBASIC11.92□□□□□ -0.5
Rfx3P48381 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Rfx3P48381 Gm7498-201ENSMUST00000203282 1084 ntBASIC11.92□□□□□ -0.5
Rfx3P48381 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Gm3695-201ENSMUST00000087222 1009 ntBASIC11.92□□□□□ -0.5
Rfx3P48381 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Gm4782-201ENSMUST00000168705 2046 ntBASIC11.92□□□□□ -0.5
Rfx3P48381 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Rfx3P48381 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Rfx3P48381 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rfx3P48381 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC11.91□□□□□ -0.5
Rfx3P48381 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC11.91□□□□□ -0.5
Rfx3P48381 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Rfx3P48381 Gm17435-202ENSMUST00000212699 1998 ntBASIC11.91□□□□□ -0.5
Rfx3P48381 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC11.91□□□□□ -0.5
Rfx3P48381 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Gm29667-201ENSMUST00000190817 490 ntBASIC11.91□□□□□ -0.5
Rfx3P48381 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC11.91□□□□□ -0.5
Rfx3P48381 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Rfx3P48381 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC11.91□□□□□ -0.5
Rfx3P48381 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Rfx3P48381 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Gm38385-201ENSMUST00000194454 2351 ntBASIC11.91□□□□□ -0.5
Rfx3P48381 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Rfx3P48381 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Gm20633-201ENSMUST00000176742 2831 ntBASIC11.91□□□□□ -0.5
Rfx3P48381 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rfx3P48381 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Rfx3P48381 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Rfx3P48381 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Gm45643-201ENSMUST00000211364 1484 ntBASIC11.9□□□□□ -0.5
Rfx3P48381 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Rfx3P48381 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
Rfx3P48381 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC11.9□□□□□ -0.5
Rfx3P48381 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC11.9□□□□□ -0.5
Rfx3P48381 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC11.9□□□□□ -0.5
Rfx3P48381 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Gm21854-201ENSMUST00000179901 471 ntBASIC11.9□□□□□ -0.5
Rfx3P48381 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC11.9□□□□□ -0.5
Rfx3P48381 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC11.9□□□□□ -0.5
Rfx3P48381 AC139580.1-202ENSMUST00000223574 928 ntBASIC11.9□□□□□ -0.5
Rfx3P48381 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Rfx3P48381 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rfx3P48381 Gm9797-201ENSMUST00000052902 613 ntBASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms