Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Rps4l-202ENSMUST00000204242 789 ntBASIC15.53■□□□□ 0.08
Col3a1P08121 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 AC167013.1-201ENSMUST00000228592 202 ntBASIC15.53■□□□□ 0.08
Col3a1P08121 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm37691-201ENSMUST00000192147 2573 ntBASIC15.53■□□□□ 0.08
Col3a1P08121 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.53■□□□□ 0.08
Col3a1P08121 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm8862-201ENSMUST00000198379 1346 ntBASIC15.53■□□□□ 0.08
Col3a1P08121 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Gm13813-201ENSMUST00000120998 787 ntBASIC15.52■□□□□ 0.08
Col3a1P08121 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC15.52■□□□□ 0.08
Col3a1P08121 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC15.52■□□□□ 0.08
Col3a1P08121 Gm45186-201ENSMUST00000206874 478 ntBASIC15.52■□□□□ 0.08
Col3a1P08121 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
Col3a1P08121 AC122314.1-201ENSMUST00000223056 2239 ntBASIC15.52■□□□□ 0.08
Col3a1P08121 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Col3a1P08121 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC15.52■□□□□ 0.08
Col3a1P08121 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Gm6015-201ENSMUST00000217493 1586 ntBASIC15.52■□□□□ 0.08
Col3a1P08121 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col3a1P08121 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.52■□□□□ 0.07
Col3a1P08121 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.07
Col3a1P08121 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC15.52■□□□□ 0.07
Col3a1P08121 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC15.52■□□□□ 0.07
Col3a1P08121 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC15.52■□□□□ 0.07
Col3a1P08121 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC15.52■□□□□ 0.07
Col3a1P08121 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Col3a1P08121 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC15.52■□□□□ 0.07
Col3a1P08121 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col3a1P08121 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Col3a1P08121 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC15.51■□□□□ 0.07
Col3a1P08121 Gm10176-201ENSMUST00000159707 2264 ntBASIC15.51■□□□□ 0.07
Col3a1P08121 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Col3a1P08121 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Col3a1P08121 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC15.51■□□□□ 0.07
Col3a1P08121 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Gm13665-201ENSMUST00000120830 528 ntBASIC15.51■□□□□ 0.07
Col3a1P08121 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC15.51■□□□□ 0.07
Col3a1P08121 Gm12715-201ENSMUST00000121430 1128 ntBASIC15.51■□□□□ 0.07
Col3a1P08121 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC15.51■□□□□ 0.07
Col3a1P08121 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Col3a1P08121 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col3a1P08121 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms