Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trim3Q9R1R2 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Trim3Q9R1R2 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim3Q9R1R2 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.93■□□□□ 0.78
Trim3Q9R1R2 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim3Q9R1R2 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Trim3Q9R1R2 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.92■□□□□ 0.78
Trim3Q9R1R2 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim3Q9R1R2 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim3Q9R1R2 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.91■□□□□ 0.78
Trim3Q9R1R2 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim3Q9R1R2 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim3Q9R1R2 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim3Q9R1R2 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.9■□□□□ 0.78
Trim3Q9R1R2 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim3Q9R1R2 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim3Q9R1R2 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim3Q9R1R2 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim3Q9R1R2 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trim3Q9R1R2 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trim3Q9R1R2 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim3Q9R1R2 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.88■□□□□ 0.77
Trim3Q9R1R2 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC19.88■□□□□ 0.77
Trim3Q9R1R2 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim3Q9R1R2 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim3Q9R1R2 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Trim3Q9R1R2 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim3Q9R1R2 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.87■□□□□ 0.77
Trim3Q9R1R2 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim3Q9R1R2 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim3Q9R1R2 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Gm22567-201ENSMUST00000175542 342 ntBASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim3Q9R1R2 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.85■□□□□ 0.77
Trim3Q9R1R2 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.84■□□□□ 0.77
Trim3Q9R1R2 Gm26766-202ENSMUST00000227544 2347 ntBASIC19.84■□□□□ 0.77
Trim3Q9R1R2 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim3Q9R1R2 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Trim3Q9R1R2 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Trim3Q9R1R2 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim3Q9R1R2 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.83■□□□□ 0.77
Trim3Q9R1R2 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim3Q9R1R2 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.83■□□□□ 0.76
Trim3Q9R1R2 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim3Q9R1R2 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim3Q9R1R2 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.82■□□□□ 0.76
Trim3Q9R1R2 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim3Q9R1R2 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim3Q9R1R2 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim3Q9R1R2 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim3Q9R1R2 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim3Q9R1R2 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Trim3Q9R1R2 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim3Q9R1R2 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
Trim3Q9R1R2 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.81■□□□□ 0.76
Trim3Q9R1R2 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.81■□□□□ 0.76
Trim3Q9R1R2 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim3Q9R1R2 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.8■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms