Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cstf1Q99LC2 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cstf1Q99LC2 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC21.34■■□□□ 1.01
Cstf1Q99LC2 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cstf1Q99LC2 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
Cstf1Q99LC2 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cstf1Q99LC2 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cstf1Q99LC2 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.33■■□□□ 1.01
Cstf1Q99LC2 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cstf1Q99LC2 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cstf1Q99LC2 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cstf1Q99LC2 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
Cstf1Q99LC2 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.32■■□□□ 1
Cstf1Q99LC2 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cstf1Q99LC2 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cstf1Q99LC2 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cstf1Q99LC2 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cstf1Q99LC2 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Cstf1Q99LC2 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.31■■□□□ 1
Cstf1Q99LC2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cstf1Q99LC2 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cstf1Q99LC2 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Cstf1Q99LC2 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.3■■□□□ 1
Cstf1Q99LC2 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.3■■□□□ 1
Cstf1Q99LC2 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Cstf1Q99LC2 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cstf1Q99LC2 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cstf1Q99LC2 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.29■■□□□ 1
Cstf1Q99LC2 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cstf1Q99LC2 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cstf1Q99LC2 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC21.29■■□□□ 1
Cstf1Q99LC2 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cstf1Q99LC2 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Cstf1Q99LC2 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.29■■□□□ 1
Cstf1Q99LC2 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
Cstf1Q99LC2 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cstf1Q99LC2 Nsd1-206ENSMUST00000224918 1001 ntBASIC21.28■■□□□ 1
Cstf1Q99LC2 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Cstf1Q99LC2 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cstf1Q99LC2 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cstf1Q99LC2 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cstf1Q99LC2 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cstf1Q99LC2 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.27■■□□□ 1
Cstf1Q99LC2 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cstf1Q99LC2 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cstf1Q99LC2 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cstf1Q99LC2 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cstf1Q99LC2 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cstf1Q99LC2 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Cstf1Q99LC2 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cstf1Q99LC2 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cstf1Q99LC2 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Cstf1Q99LC2 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Cstf1Q99LC2 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cstf1Q99LC2 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.25■□□□□ 0.99
Cstf1Q99LC2 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.25■□□□□ 0.99
Cstf1Q99LC2 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cstf1Q99LC2 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Cstf1Q99LC2 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.25■□□□□ 0.99
Cstf1Q99LC2 Gm29257-201ENSMUST00000186115 639 ntBASIC21.24■□□□□ 0.99
Cstf1Q99LC2 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cstf1Q99LC2 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cstf1Q99LC2 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cstf1Q99LC2 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cstf1Q99LC2 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cstf1Q99LC2 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.23■□□□□ 0.99
Cstf1Q99LC2 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cstf1Q99LC2 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.23■□□□□ 0.99
Cstf1Q99LC2 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cstf1Q99LC2 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cstf1Q99LC2 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cstf1Q99LC2 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.22■□□□□ 0.99
Cstf1Q99LC2 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cstf1Q99LC2 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Cstf1Q99LC2 Gm28731-201ENSMUST00000185564 1569 ntBASIC21.22■□□□□ 0.99
Cstf1Q99LC2 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Cstf1Q99LC2 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cstf1Q99LC2 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cstf1Q99LC2 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cstf1Q99LC2 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC21.21■□□□□ 0.99
Cstf1Q99LC2 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.21■□□□□ 0.99
Cstf1Q99LC2 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cstf1Q99LC2 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cstf1Q99LC2 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cstf1Q99LC2 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms