Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp2bQ8BJF9 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp2bQ8BJF9 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.73■■□□□ 1.07
Chmp2bQ8BJF9 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Chmp2bQ8BJF9 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp2bQ8BJF9 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp2bQ8BJF9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp2bQ8BJF9 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Chmp2bQ8BJF9 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp2bQ8BJF9 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp2bQ8BJF9 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp2bQ8BJF9 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Chmp2bQ8BJF9 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp2bQ8BJF9 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp2bQ8BJF9 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp2bQ8BJF9 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.71■■□□□ 1.07
Chmp2bQ8BJF9 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp2bQ8BJF9 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp2bQ8BJF9 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp2bQ8BJF9 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Chmp2bQ8BJF9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Gm11687-201ENSMUST00000118911 886 ntBASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2bQ8BJF9 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2bQ8BJF9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Chmp2bQ8BJF9 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Chmp2bQ8BJF9 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Chmp2bQ8BJF9 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Chmp2bQ8BJF9 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Chmp2bQ8BJF9 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Chmp2bQ8BJF9 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp2bQ8BJF9 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2bQ8BJF9 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2bQ8BJF9 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2bQ8BJF9 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2bQ8BJF9 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Chmp2bQ8BJF9 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2bQ8BJF9 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Chmp2bQ8BJF9 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2bQ8BJF9 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp2bQ8BJF9 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp2bQ8BJF9 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp2bQ8BJF9 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp2bQ8BJF9 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Chmp2bQ8BJF9 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.64■■□□□ 1.06
Chmp2bQ8BJF9 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Chmp2bQ8BJF9 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Chmp2bQ8BJF9 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Chmp2bQ8BJF9 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.64■■□□□ 1.05
Chmp2bQ8BJF9 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Chmp2bQ8BJF9 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Chmp2bQ8BJF9 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Chmp2bQ8BJF9 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Chmp2bQ8BJF9 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC21.63■■□□□ 1.05
Chmp2bQ8BJF9 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
Chmp2bQ8BJF9 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Chmp2bQ8BJF9 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp2bQ8BJF9 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp2bQ8BJF9 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp2bQ8BJF9 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp2bQ8BJF9 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp2bQ8BJF9 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Chmp2bQ8BJF9 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Chmp2bQ8BJF9 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.62■■□□□ 1.05
Chmp2bQ8BJF9 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp2bQ8BJF9 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp2bQ8BJF9 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp2bQ8BJF9 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Chmp2bQ8BJF9 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp2bQ8BJF9 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp2bQ8BJF9 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp2bQ8BJF9 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.6■■□□□ 1.05
Chmp2bQ8BJF9 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp2bQ8BJF9 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp2bQ8BJF9 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Chmp2bQ8BJF9 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC21.59■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms