Protein–RNA interactions for Protein: Q7TNK1

Rfx4, Transcription factor RFX4, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx4Q7TNK1 Mir3960-201ENSMUST00000198213 73 ntBASIC20.39■□□□□ 0.85
Rfx4Q7TNK1 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
Rfx4Q7TNK1 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx4Q7TNK1 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx4Q7TNK1 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Rfx4Q7TNK1 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Rfx4Q7TNK1 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.38■□□□□ 0.85
Rfx4Q7TNK1 Gm6821-201ENSMUST00000107540 542 ntBASIC20.38■□□□□ 0.85
Rfx4Q7TNK1 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Rfx4Q7TNK1 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx4Q7TNK1 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx4Q7TNK1 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx4Q7TNK1 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx4Q7TNK1 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx4Q7TNK1 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx4Q7TNK1 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx4Q7TNK1 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx4Q7TNK1 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Rfx4Q7TNK1 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC20.34■□□□□ 0.85
Rfx4Q7TNK1 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Rfx4Q7TNK1 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx4Q7TNK1 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx4Q7TNK1 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx4Q7TNK1 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx4Q7TNK1 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx4Q7TNK1 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx4Q7TNK1 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Rfx4Q7TNK1 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx4Q7TNK1 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Rfx4Q7TNK1 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx4Q7TNK1 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx4Q7TNK1 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx4Q7TNK1 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx4Q7TNK1 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.31■□□□□ 0.84
Rfx4Q7TNK1 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx4Q7TNK1 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx4Q7TNK1 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx4Q7TNK1 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx4Q7TNK1 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Rfx4Q7TNK1 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Rfx4Q7TNK1 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx4Q7TNK1 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx4Q7TNK1 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Rfx4Q7TNK1 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Rfx4Q7TNK1 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx4Q7TNK1 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx4Q7TNK1 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Rfx4Q7TNK1 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Rfx4Q7TNK1 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx4Q7TNK1 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx4Q7TNK1 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx4Q7TNK1 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx4Q7TNK1 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.27■□□□□ 0.84
Rfx4Q7TNK1 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx4Q7TNK1 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx4Q7TNK1 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Rfx4Q7TNK1 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.83
Rfx4Q7TNK1 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx4Q7TNK1 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC20.26■□□□□ 0.83
Rfx4Q7TNK1 Gm45364-201ENSMUST00000210883 159 ntBASIC20.26■□□□□ 0.83
Rfx4Q7TNK1 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx4Q7TNK1 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx4Q7TNK1 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx4Q7TNK1 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms