Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col27a1Q5QNQ9 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col27a1Q5QNQ9 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col27a1Q5QNQ9 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col27a1Q5QNQ9 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col27a1Q5QNQ9 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
Col27a1Q5QNQ9 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col27a1Q5QNQ9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col27a1Q5QNQ9 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col27a1Q5QNQ9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Col27a1Q5QNQ9 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col27a1Q5QNQ9 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.35■■□□□ 1.01
Col27a1Q5QNQ9 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.35■■□□□ 1.01
Col27a1Q5QNQ9 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.35■■□□□ 1.01
Col27a1Q5QNQ9 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col27a1Q5QNQ9 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col27a1Q5QNQ9 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Col27a1Q5QNQ9 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col27a1Q5QNQ9 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Col27a1Q5QNQ9 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
Col27a1Q5QNQ9 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col27a1Q5QNQ9 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col27a1Q5QNQ9 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col27a1Q5QNQ9 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col27a1Q5QNQ9 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col27a1Q5QNQ9 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col27a1Q5QNQ9 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col27a1Q5QNQ9 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col27a1Q5QNQ9 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Col27a1Q5QNQ9 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col27a1Q5QNQ9 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col27a1Q5QNQ9 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col27a1Q5QNQ9 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col27a1Q5QNQ9 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.32■■□□□ 1
Col27a1Q5QNQ9 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Col27a1Q5QNQ9 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col27a1Q5QNQ9 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Col27a1Q5QNQ9 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col27a1Q5QNQ9 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col27a1Q5QNQ9 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.3■■□□□ 1
Col27a1Q5QNQ9 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col27a1Q5QNQ9 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Col27a1Q5QNQ9 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col27a1Q5QNQ9 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
Col27a1Q5QNQ9 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.29■■□□□ 1
Col27a1Q5QNQ9 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Col27a1Q5QNQ9 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col27a1Q5QNQ9 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC21.29■■□□□ 1
Col27a1Q5QNQ9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.28■■□□□ 1
Col27a1Q5QNQ9 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.28■■□□□ 1
Col27a1Q5QNQ9 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.28■■□□□ 1
Col27a1Q5QNQ9 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col27a1Q5QNQ9 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col27a1Q5QNQ9 Gm27011-201ENSMUST00000182352 972 ntBASIC21.27■■□□□ 1
Col27a1Q5QNQ9 Gm5874-201ENSMUST00000096101 508 ntBASIC21.27■■□□□ 1
Col27a1Q5QNQ9 Gm7291-201ENSMUST00000199147 382 ntBASIC21.27■□□□□ 0.99
Col27a1Q5QNQ9 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col27a1Q5QNQ9 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col27a1Q5QNQ9 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col27a1Q5QNQ9 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC21.25■□□□□ 0.99
Col27a1Q5QNQ9 Gm12251-201ENSMUST00000117893 792 ntBASIC21.25■□□□□ 0.99
Col27a1Q5QNQ9 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col27a1Q5QNQ9 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col27a1Q5QNQ9 Mir7075-201ENSMUST00000184187 82 ntBASIC21.25■□□□□ 0.99
Col27a1Q5QNQ9 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col27a1Q5QNQ9 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col27a1Q5QNQ9 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col27a1Q5QNQ9 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col27a1Q5QNQ9 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col27a1Q5QNQ9 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col27a1Q5QNQ9 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21.24■□□□□ 0.99
Col27a1Q5QNQ9 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Col27a1Q5QNQ9 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC21.24■□□□□ 0.99
Col27a1Q5QNQ9 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col27a1Q5QNQ9 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col27a1Q5QNQ9 Gm43173-201ENSMUST00000202246 593 ntBASIC21.23■□□□□ 0.99
Col27a1Q5QNQ9 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col27a1Q5QNQ9 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col27a1Q5QNQ9 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col27a1Q5QNQ9 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
Col27a1Q5QNQ9 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col27a1Q5QNQ9 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col27a1Q5QNQ9 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col27a1Q5QNQ9 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col27a1Q5QNQ9 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col27a1Q5QNQ9 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col27a1Q5QNQ9 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col27a1Q5QNQ9 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col27a1Q5QNQ9 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col27a1Q5QNQ9 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col27a1Q5QNQ9 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Col27a1Q5QNQ9 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Col27a1Q5QNQ9 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col27a1Q5QNQ9 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col27a1Q5QNQ9 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC21.2■□□□□ 0.98
Col27a1Q5QNQ9 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.2■□□□□ 0.98
Col27a1Q5QNQ9 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col27a1Q5QNQ9 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Col27a1Q5QNQ9 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col27a1Q5QNQ9 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.19■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 68.3 ms