Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm15547-201ENSMUST00000122152 333 ntBASIC15.39■□□□□ 0.05
Scn11aQ9R053 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Scn11aQ9R053 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Gm43058-201ENSMUST00000197645 625 ntBASIC15.39■□□□□ 0.05
Scn11aQ9R053 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC15.39■□□□□ 0.05
Scn11aQ9R053 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Scn11aQ9R053 AC141438.2-201ENSMUST00000215068 271 ntBASIC15.39■□□□□ 0.05
Scn11aQ9R053 Gm4864-201ENSMUST00000219894 1461 ntBASIC15.39■□□□□ 0.05
Scn11aQ9R053 AC135114.1-201ENSMUST00000228682 270 ntBASIC15.39■□□□□ 0.05
Scn11aQ9R053 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Scn11aQ9R053 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gm4760-201ENSMUST00000119663 1030 ntBASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gm13570-201ENSMUST00000140763 309 ntBASIC15.38■□□□□ 0.05
Scn11aQ9R053 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gm44405-201ENSMUST00000198952 126 ntBASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gm18393-201ENSMUST00000208349 1131 ntBASIC15.38■□□□□ 0.05
Scn11aQ9R053 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gm37795-201ENSMUST00000194216 2459 ntBASIC15.38■□□□□ 0.05
Scn11aQ9R053 Gm44851-201ENSMUST00000205735 2309 ntBASIC15.38■□□□□ 0.05
Scn11aQ9R053 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Scn11aQ9R053 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Gm15276-201ENSMUST00000145953 498 ntBASIC15.37■□□□□ 0.05
Scn11aQ9R053 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Gstp-ps-201ENSMUST00000195526 631 ntBASIC15.37■□□□□ 0.05
Scn11aQ9R053 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC15.37■□□□□ 0.05
Scn11aQ9R053 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Scn11aQ9R053 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Gm25700-201ENSMUST00000177693 110 ntBASIC15.36■□□□□ 0.05
Scn11aQ9R053 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Gm5846-201ENSMUST00000193146 1414 ntBASIC15.36■□□□□ 0.05
Scn11aQ9R053 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.36■□□□□ 0.05
Scn11aQ9R053 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms