Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lima1Q9ERG0 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gm4875-201ENSMUST00000118257 786 ntBASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gm15920-201ENSMUST00000118998 402 ntBASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gm11557-201ENSMUST00000120200 1008 ntBASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gm8927-201ENSMUST00000181978 981 ntBASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 AC131997.1-201ENSMUST00000228611 1229 ntBASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gm3222-201ENSMUST00000071282 990 ntBASIC13.03□□□□□ -0.32
Lima1Q9ERG0 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Rubie-203ENSMUST00000227803 2430 ntBASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lima1Q9ERG0 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Matn2-203ENSMUST00000226766 3252 ntBASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Lima1Q9ERG0 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Gm4204-201ENSMUST00000110798 1231 ntBASIC13.02□□□□□ -0.33
Lima1Q9ERG0 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lima1Q9ERG0 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms